主要学习和工作经历

2002/08－2005/12，浙江大学博士研究生

2005/12－2007/01，密歇根州立大学交流访问学生

2007/01－2007/06，俄克拉荷马大学交流访问学生

2007/08－2009/07，俄克拉荷马大学博士后

2009/08－2014/01，俄克拉荷马大学研究科学家

2014/02－至今，　中国科学院生态环境研究中心研究员

研究方向

微生物生态学、环境基因组学、生物信息学

近5年承担科研项目情况

1. 国家自然科学基金面上，开发基于毒力基因的环境病原菌检测技术和风险评估方法, 2023.1-2026.12，主持。
2. 国家重点研发计划，城市有机固废生物转化功能菌群及其代谢网络调控的基础理论，2020.1-2023.12，主持。
3. 国家自然基金联合资助项目, 黄河三角洲湿地生态系统中微生物驱动的碳氮元素循环过程和机制, 2020.1-2023.12，主持。
4. 国家自然基金面上项目，开发细胞内融合基因技术解析海底硫酸盐型甲烷厌氧氧化菌群多样性，2019.1-2021.12，主持。
5. 中科院前沿重点项目, 污染环境中功能微生物类群的快速识别和原位调控, 2016.9-2020.12，主持。
6. 国家自然基金面上项目（91851106），开发细胞内融合基因技术解析海底硫酸盐型甲烷厌氧氧化菌群多样性，2019.1-2021.12，主持。

科研获奖及学术荣誉

1. 2019年获“百人计划”终期评估优秀。
2. 2018-2023 年连续6次获科睿唯安全球高被引学者。

代表性论文

1. Jing Tian#*, Jennifer Dungait#*, Ruixing Hou#, Ye Deng#, Iain Hartley, Yunfeng Yang, Yakov Kuzyakov, Fusuo Zhang*, M. Francesca Cotrufo*, Jizhong Zhou*. Microbially mediated mechanisms underlie soil carbon accrual by conservation agriculture under decade-long warming. Nature Communications, 2024, 15: 377.
2. Qing He, Shang Wang*, Kai Feng, Sean T Michaletz, Weiguo Hou, Wenhui Zhang, Fangru Li, Yidi Zhang, Danrui Wang, Xi Peng, Xingsheng Yang, Ye Deng*. High speciation rate of niche specialists in hot springs. The ISME Journal, 2023, doi.org/10.1038/s41396-023-01447-4
3. Danrui Wang, Jiangtao Li, Lei Su, Wenli Shen, Kai Feng, Xi Peng, Zhujun Wang, Bo Zhao, Zheng Zhang, Zhaojing Zhang, Étienne Yergeau, Ye Deng*. Phylogenetic diversity of functional genes in deep-sea cold seeps: a novel perspective on metagenomics. Microbiome, 2023, 11: 276.
4. Zheng Zhang, Jiang Li*, Hongjun Li, Linlin Wang, Yuqi Zhou, Shuzhen Li, Zhaojing Zhang, Kai Feng, Ye Deng*. Environmental DNA metabarcoding reveals the influence of human activities on microeukaryotic plankton along the Chinese coastline. Water Research, 2023, 233: 119730
5. Haijuan Zhang†, Kaifu Zheng†, Songsong Gu, Yingcheng Wang, Xueli Zhou, Huilin Yan, Kun Ma, Yangan Zhao, Xin Jin, Guangxin Lu*, Ye Deng*. Grass–Legume Mixture with Rhizobium Inoculation Enhanced the Restoration Effects of Organic Fertilizer. Microorganisms, 2023, 11(5), 1114
6. Lingzhan Miao, Wanyi Li, Tanveer M. Adyel, Yu Yao, Ye Deng*, Jun Wu, Yongqiang Zhou, Yue Yu, Jun Hou*. Spatio-temporal succession of microbial communities in plastisphere and their potentials for plastic degradation in freshwater ecosystems. Water Research, 2023, doi.org/10.1016/j.watres.2022.119406.
7. Shuzhen Li, Wenli Shen, Shenyang Lian, Yueni Wu, Yuanyuan Qu, Ye Deng*. DARHD: a sequence database for aromatic ring-hydroxylating dioxygenase analysis and primer evaluation. Journal of Hazardous Materials, 2022, doi.org/10.1016/j.jhazmat.2022.129230
8. Ziyan Wei, Wenli Shen, Kai Feng, Youzhi Feng, Zhili He, Yan Li, Chengying Jiang, Shuangjiang Liu, Yong-Guan Zhu, Ye Deng*. Organic fertilizer potentiates the transfer of typical antibiotic resistance gene among special bacterial species. Journal of Hazardous Materials, 2022, doi.org/10.1016/j.jhazmat.2022.128985.
9. Xingsheng Yang, Zhaojing Zhang, Shuzhen Li, Qing He, Xi Peng, Xiongfeng Du, Kai Feng, Shang Wang*, Ye Deng*. Fungal dynamics and potential functions during anaerobic digestion of food waste. Environmental Research, 2022, doi.org/10.1016/j.envres.2022.113298
10. Yuqi Zhou#, Baoyu Sun#, Baohua Xie, Kai Feng, Zhaojing Zhang, Zheng Zhang, Shuzhen Li, Xiongfeng Du, Qi Zhang, Songsong Gu, Wen Song, Linlin Wang, Jianyang Xia, Guangxuan Han*, Ye Deng*. Warming reshaped the microbial hierarchical interactions. Global Change Biology, 2021. doi.org/10.1111/gcb.15891.
11. Ziyan Wei, Kai Feng, Zhujun Wang, Yu Zhang, Min Yang, Yong-Guan Zhu, Marko P. J. Virta, and Ye Deng*. High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants. Environmental Science & Technology, 2021, DOI: 10.1021/acs.est.1c01250
12. Shang Wang#, Xuelian Bao#, Kai Feng#, Ye Deng*, Wenjun Zhou, Pengshuai Shao, Tiantian Zheng, Fei Yao, Shan Yang, Shengen Liu, Rongjiu Shi, Zhen Bai, Hongtu Xie, Jinghua Yu, Ying Zhang, Yiping Zhang, Liqing Sha, Qinghai Song, Yuntong Liu, Jizhong Zhou, Yuguang Zhang, Hui Li, Qingkui Wang, Xingguo Han, Yongguan Zhu, Chao Liang*. Warming-driven migration of core microbiota projects soil property changes at continental scale. Science Bulletin, 2021, 10.1016/j.scib.2021.01.021.
13. Xiongfeng Du, Ye Deng*, Shuzhen Li, Arthur Escalas, Kai Feng, Qing He, Zhujun Wang, Yueni Wu, Danrui Wang, Xi Peng, Shang Wang. Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process. Molecular Ecology, 2021, 30(4): 1072-1085
14. Kai Feng, Shang Wang, Ziyan Wei, Zhujun Wang, Zhaojing Zhang, Yueni Wu, Yuguang Zhang, Ye Deng*. Niche width of above- and belowground organisms varied in predicting biodiversity profiling along a latitudinal gradient. Molecular Ecology, 2020. 29(10): 1890-1902
15. Zhili He#,*, Ye Deng#, Meiying Xu#, Juan Li, Junyi Liang, Jinbo Xiong, Hao Yu, Bo Wu, Liyou Wu, Kai Xue, Shengjing Shi, Yolima Carrillo, Joy D. Van Nostrand, Sarah E. Hobbie, Peter B. Reich, Christopher W. Schadt, Angela D. Kent, Elise 6 Pendall, Matthew Wallenstein, Yiqi Luo, Qingyun Yan*, Jizhong Zhou*. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International, 2020, 144: 106068.
16. Zhujun Wang#, Guangxin Lu#, Mengting Yuan, Hao Yu, Shang Wang, Xin Li, Ye Deng*. Elevated temperature overrides the effects of N amendment in Tibetan grassland on soil microbiome. Soil Biology and Biochemistry, 2019, 136: 107532.
17. Huayu Qin, Shang Wang, Kai Feng, Zhili He, Marko P. J. Virta, Weiguo Hou, Hailiang Dong, Ye Deng*. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. Microbiome, 2019, 7:71.
18. Ziyan Wei, Yueni Wu, Kai Feng, Min Yang, Yu Zhang, Qichao Tu, Jun Wang, Ye Deng*. ARGA, a pipeline for primer evaluation on antibiotic resistance genes. Environment International, 2019, 128:137-145.
19. Zhaojing Zhang, Ye Deng*, Kai Feng, Weiwei Cai, Shuzhen Li, Huaqun Yin, Meiying Xu, Daliang Ning, Yuanyuan Qu*. Deterministic assembly and diversity gradient altered the biofilm community performances of bioreactors. Environmental Science & Technology, 2019, 53(3): 1315-1324.